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A-optimality criteria based subsampling under measurement constraints for Generalised Linear Models

Source: R/AoptimalMCGLMSub.R
AoptimalMCGLMSub.Rd

Using this function sample from big data under linear, logistic and Poisson regression to describe the data when response \(y\) is partially unavailable. Subsampling probabilities are obtained based on the A-optimality criteria.

Usage

AoptimalMCGLMSub(r1,r2,Y,X,N,family)

Arguments

r1

sample size for initial random sampling

r2

sample size for optimal sampling

Y

response data or Y

X

covariate data or X matrix that has all the covariates (first column is for the intercept)

N

size of the big data

family

a character value for "linear", "logistic" and "poisson" regression from Generalised Linear Models

Value

The output of AoptimalMCGLMSub gives a list of

Beta_Estimates estimated model parameters in a data.frame after subsampling

Variance_Epsilon_Estimates matrix of estimated variance for epsilon in a data.frame after subsampling (valid only for linear regression)

Sample_A-Optimality list of indexes for the initial and optimal samples obtained based on A-Optimality criteria

Subsampling_Probability matrix of calculated subsampling probabilities for A-optimality criteria

Details

Two stage subsampling algorithm for big data under Generalised Linear Models (linear, logistic and Poisson regression) when the response is not available for subsampling probability evaluation.

First stage is to obtain a random sample of size \(r_1\) and estimate the model parameters. Using the estimated parameters subsampling probabilities are evaluated for A-optimality criteria.

Through the estimated subsampling probabilities an optimal sample of size \(r_2 \ge r_1\) is obtained. Finally, only the optimal sample is used and the model parameters are estimated.

NOTE : If input parameters are not in given domain conditions necessary error messages will be provided to go further.

If \(r_2 \ge r_1\) is not satisfied then an error message will be produced.

If the big data \(X,Y\) has any missing values then an error message will be produced.

The big data size \(N\) is compared with the sizes of \(X,Y\) and if they are not aligned an error message will be produced.

A character value is provided for family and if it is not of the any three types an error message will be produced.

References

Zhang T, Ning Y, Ruppert D (2021). “Optimal sampling for generalized linear models under measurement constraints.” Journal of Computational and Graphical Statistics, 30(1), 106--114.

Examples

Dist<-"Normal"; Dist_Par<-list(Mean=0,Variance=1,Error_Variance=0.5)
No_Of_Var<-2; Beta<-c(-1,2,1); N<-10000; Family<-"linear"
Full_Data<-GenGLMdata(Dist,Dist_Par,No_Of_Var,Beta,N,Family)

r1<-300; r2<-rep(100*c(6,12),50); Original_Data<-Full_Data$Complete_Data;

AoptimalMCGLMSub(r1 = r1, r2 = r2,
                 Y = as.matrix(Original_Data[,colnames(Original_Data) %in% c("Y")]),
                 X = as.matrix(Original_Data[,-1]),N = nrow(Original_Data),
                 family = "linear")->Results
#> Step 1 of the algorithm completed.
#> Step 2 of the algorithm completed.

plot_Beta(Results)


Dist<-"Normal"; Dist_Par<-list(Mean=0,Variance=1)
No_Of_Var<-2; Beta<-c(-1,2,1); N<-10000; Family<-"logistic"
Full_Data<-GenGLMdata(Dist,Dist_Par,No_Of_Var,Beta,N,Family)

r1<-300; r2<-rep(100*c(6,12),50); Original_Data<-Full_Data$Complete_Data;

AoptimalMCGLMSub(r1 = r1, r2 = r2,
                 Y = as.matrix(Original_Data[,colnames(Original_Data) %in% c("Y")]),
                 X = as.matrix(Original_Data[,-1]),N = nrow(Original_Data),
                 family = "logistic")->Results
#> Step 1 of the algorithm completed.
#> Step 2 of the algorithm completed.

plot_Beta(Results)


Dist<-"Normal";
No_Of_Var<-2; Beta<-c(-1,2,1); N<-10000; Family<-"poisson"
Full_Data<-GenGLMdata(Dist,NULL,No_Of_Var,Beta,N,Family)

r1<-300; r2<-rep(100*c(6,12),50); Original_Data<-Full_Data$Complete_Data;

AoptimalMCGLMSub(r1 = r1, r2 = r2,
                 Y = as.matrix(Original_Data[,colnames(Original_Data) %in% c("Y")]),
                 X = as.matrix(Original_Data[,-1]),N = nrow(Original_Data),
                 family = "poisson")->Results
#> Step 1 of the algorithm completed.
#> Step 2 of the algorithm completed.

plot_Beta(Results)